NSTL国家科技图书文献中心

1. PhyloForge: Unifying Micro- and Macroevolution With Comprehensive Genomic Signals NSTL国家科技图书文献中心

Wang, Ya | Dong, Wei ... - 《Molecular ecology resources》 - 2025,25(3) - n/a～n/a - 共13页

摘要：, comprehensively utilising diverse phylogenomic* signals, such as* | multiple phylogenomic* signals, enabling the unified* | The dimensions of phylogenetic research have | expanded to encompass the study of large-scale | populations at the microevolutionary level and comparisons

关键词： macroevolution | microevolution | PhyloForge | phylogenomic signals

2. Phylogenomic conflict analyses of the plastid and mitochondrial genomes via deep genome skimming highlight their independent evolutionary histories: A case study in the cinquefoil genus Potentilla sensu lato (Potentilleae, Rosaceae) NSTL国家科技图书文献中心

Xue, Tian-Tian | Janssens, Steven B.... - 《Molecular phylogenetics and evolution》 - 2024,190 - ARTN 107956～ - 共12页

摘要：Phylogenomic conflicts are widespread among | QS detected conflicting signals* within the two* | conflict signals* mainly occurred among shorter loci* | genomic data, with most previous studies primarily | focusing on nuclear datasets instead of organellar

关键词： Conflict analysis | Mitochondrial genome | Organellar genome | Phylogenomics | Plastome | Potentilla | CHLOROPLAST DNA | EARLY DIVERSIFICATION | PATERNAL INHERITANCE | RESOLVES...

3. Phylogenomic analyses revealed widely occurring hybridization events across Elsholtzieae (Lamiaceae) NSTL国家科技图书文献中心

Wang, Yan | Wu, Xuexue ... - 《Molecular phylogenetics and evolution》 - 2024,198 - 共11页

摘要： signals, thereby complicating phylogenetic inference. In | hybridization. In conclusion, this study provides phylogenomic | Obtaining a robust phylogeny proves | challenging due to the intricate evolutionary history of | species, where processes such as hybridization and

关键词： Elsholtzia | Perilla | Keiskea | Chloroplast capture | Introgression | Incomplete lineage sorting

4. Phylogenomic Discordance is Driven by Wide-Spread Introgression and Incomplete Lineage Sorting During Rapid Species Diversification Within Rattlesnakes (Viperidae: Crotalus and Sistrurus ) NSTL国家科技图书文献中心

Myers, Edward A. | Rautsaw, Rhett M.... - 《Systematic Biology》 - 2024,73(4) - 722～741 - 共20页

摘要： these signals. Insight from genome-wide data further | only be understood in a phylogenomic* context* | Phylogenomics allows us to uncover the | historical signal of evolutionary processes through time | and estimate phylogenetic networks accounting for

关键词： Anomaly zone | crotalinae | diversification | hemiplasy | introgression | phylogenomics | recombination | LIKELY GENE TREES | MOLECULAR SYSTEMATICS | WESTERN RATTLESNAKE...

5. Small Regulatory RNAs of the Rsm Clan in Pseudomonas NSTL国家科技图书文献中心

María Trinidad Galle... | Matías Garavaglia ... - 《Molecular Microbiology》 - 2024,122(4) - 563～582 - 共20页

摘要： autoinducer signals* channelled through the GacS/GacA two* | complete genomes that cover 28 phylogenomic* clades across* | ABSTRACT Bacteria of the genus Pseudomonas are | ubiquitous on Earth due to their great metabolic | versatility and adaptation to fluctuating environments and

关键词： annotation | genomics | promoter features | Pseudomonas | Rsm clan | sequence and structural features | sRNA | synteny | taxonomic distribution

6. The Most Frequent Gene Tree Based on Phylogenomic Data Reveals Insights into the Origins of Land Vertebrates NSTL国家科技图书文献中心

Yunfeng Shan | Xiaoliang Wang ... - 《2023 International Conference on Computational Science and Computational Intelligence: CSCI 2023, Las Vegas, Nevada, USA, 13-15 December 2023, [v.1]》 - International Conference on Computational Science and Computational Intelligence - 2023, - 571～576 - 共6页

摘要： phylogenomic data. The most-to-second ratio is a valid | measure of phylogenetic support for phylogenomic* data to* | express the level of the phylogenetic signals. | Whole-genome data provide all genetic | information and offer a promising opportunity to reconstruct

关键词： Scientific computing | Genomics | Vegetation | Phylogeny | Bioinformatics | Computational intelligence

7. Phylogenomic analyses using a new 1013-gene Vitaceae bait-set support major groups of North American Vitis NSTL国家科技图书文献中心

Talavera A. | Nie Z.-L.... - 《Molecular phylogenetics and evolution》 - 2023,186 - 共5页

摘要： phylogeny. The phylogenomic* analyses support recognizing* | indicating conflicting signals* across the phylogeny* | ; therefore, they are imperative for plant phylogenomic | © 2023 Elsevier Inc.A set of newly designed | Vitaceae baits targeting 1013 genes was employed to

关键词： Grapes | Hyb-Seq | Phylogenomics | Targeted enrichment | Vitis

8. Deep reticulation: the long legacy of hybridization in vascular plant evolution EI 工程索引 NSTL国家科技图书文献中心

Stull, Gregory W. | Pham, Kasey K.... - 《The Plant Journal》 - 2023,114(4) - 743～766 - 共24页

摘要： decade, genomic and phylogenomic* datasets have revealed* | lineages of flowering plants. However, phylogenomic | disentangling signals* of ancient hybridization from other* | Hybridization has long been recognized as a | fundamental evolutionary process in plants but, until

关键词： ancient hybridization | gene flow | phylogenomics | polyploidy | reticulation | vascular plants | CHLOROPLAST DNA | GENE FLOW | HYBRID SPECIATION | ANGIOSPERM DIVERSIFICATION...

9. Phylogenomics reveals widespread hybridization and polyploidization in Henckelia (Gesneriaceae) NSTL国家科技图书文献中心

Yang, Li-Hua | Shi, Xi-Zuo ... - 《Annals of Botany》 - 2023,131(6) - 953～966 - 共14页

摘要： identified signals* of hybridization and introgression* | within our phylogenomic* dataset using several* | Background and Aims Hybridization has long | been recognized as an important process for plant | evolution and is often accompanied by polyploidization

关键词： Henckelia | polyploidy | hybridization | incomplete lineage sorting | phylogenetic conflicts | whole-genome shotgun sequencing | INTERSPECIFIC HYBRIDIZATION | HYBRID | TREE | POPULATIONS...

10. More than a spiny morphology: plastome variation in the prickly pear cacti (Opuntieae) NSTL国家科技图书文献中心

Kohler, Matias | Reginato, Marcelo ... - 《Annals of Botany》 - 2023,132(4) - 771～786 - 共16页

摘要： phylogenetic comparative framework. Phylogenomic* analyses* | analyses to assess signals* underlying contentious* | Background Plastid genomes (plastomes) have | long been recognized as highly conserved in their | overall structure, size, gene arrangement and content

关键词： Cactaceae | evolution | Opuntia | plastid genome | atypical plastomes | phylogenomics | COMPLETE CHLOROPLAST GENOME | INVERTED REPEAT | PHYLOGENETIC ANALYSIS | HIGH-FREQUENCY...

摘要：, comprehensively utilising diverse phylogenomic signals, such as | multiple phylogenomic signals, enabling the unified | The dimensions of phylogenetic research have | expanded to encompass the study of large-scale | populations at the microevolutionary level and comparisons

关键词： macroevolution | microevolution | PhyloForge | phylogenomic signals

摘要：Phylogenomic conflicts are widespread among | QS detected conflicting signals within the two | conflict signals mainly occurred among shorter loci | genomic data, with most previous studies primarily | focusing on nuclear datasets instead of organellar

关键词： Conflict analysis | Mitochondrial genome | Organellar genome | Phylogenomics | Plastome | Potentilla | CHLOROPLAST DNA | EARLY DIVERSIFICATION | PATERNAL INHERITANCE | RESOLVES...

摘要： signals, thereby complicating phylogenetic inference. In | hybridization. In conclusion, this study provides phylogenomic | Obtaining a robust phylogeny proves | challenging due to the intricate evolutionary history of | species, where processes such as hybridization and

关键词： Elsholtzia | Perilla | Keiskea | Chloroplast capture | Introgression | Incomplete lineage sorting

摘要： these signals. Insight from genome-wide data further | only be understood in a phylogenomic context | Phylogenomics allows us to uncover the | historical signal of evolutionary processes through time | and estimate phylogenetic networks accounting for

关键词： Anomaly zone | crotalinae | diversification | hemiplasy | introgression | phylogenomics | recombination | LIKELY GENE TREES | MOLECULAR SYSTEMATICS | WESTERN RATTLESNAKE...

摘要： autoinducer signals channelled through the GacS/GacA two | complete genomes that cover 28 phylogenomic clades across | ABSTRACT Bacteria of the genus Pseudomonas are | ubiquitous on Earth due to their great metabolic | versatility and adaptation to fluctuating environments and

关键词： annotation | genomics | promoter features | Pseudomonas | Rsm clan | sequence and structural features | sRNA | synteny | taxonomic distribution

摘要： phylogenomic data. The most-to-second ratio is a valid | measure of phylogenetic support for phylogenomic data to | express the level of the phylogenetic signals. | Whole-genome data provide all genetic | information and offer a promising opportunity to reconstruct

关键词： Scientific computing | Genomics | Vegetation | Phylogeny | Bioinformatics | Computational intelligence

摘要： phylogeny. The phylogenomic analyses support recognizing | indicating conflicting signals across the phylogeny | ; therefore, they are imperative for plant phylogenomic | © 2023 Elsevier Inc.A set of newly designed | Vitaceae baits targeting 1013 genes was employed to

关键词： Grapes | Hyb-Seq | Phylogenomics | Targeted enrichment | Vitis

摘要： decade, genomic and phylogenomic datasets have revealed | lineages of flowering plants. However, phylogenomic | disentangling signals of ancient hybridization from other | Hybridization has long been recognized as a | fundamental evolutionary process in plants but, until

关键词： ancient hybridization | gene flow | phylogenomics | polyploidy | reticulation | vascular plants | CHLOROPLAST DNA | GENE FLOW | HYBRID SPECIATION | ANGIOSPERM DIVERSIFICATION...

摘要： identified signals of hybridization and introgression | within our phylogenomic dataset using several | Background and Aims Hybridization has long | been recognized as an important process for plant | evolution and is often accompanied by polyploidization

关键词： Henckelia | polyploidy | hybridization | incomplete lineage sorting | phylogenetic conflicts | whole-genome shotgun sequencing | INTERSPECIFIC HYBRIDIZATION | HYBRID | TREE | POPULATIONS...

摘要： phylogenetic comparative framework. Phylogenomic analyses | analyses to assess signals underlying contentious | Background Plastid genomes (plastomes) have | long been recognized as highly conserved in their | overall structure, size, gene arrangement and content

关键词： Cactaceae | evolution | Opuntia | plastid genome | atypical plastomes | phylogenomics | COMPLETE CHLOROPLAST GENOME | INVERTED REPEAT | PHYLOGENETIC ANALYSIS | HIGH-FREQUENCY...

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国家科技图书文献中心

摘要：, comprehensively utilising diverse phylogenomic* signals, such as* | multiple phylogenomic* signals, enabling the unified* | The dimensions of phylogenetic research have | expanded to encompass the study of large-scale | populations at the microevolutionary level and comparisons

摘要：Phylogenomic conflicts are widespread among | QS detected conflicting signals* within the two* | conflict signals* mainly occurred among shorter loci* | genomic data, with most previous studies primarily | focusing on nuclear datasets instead of organellar

摘要： these signals. Insight from genome-wide data further | only be understood in a phylogenomic* context* | Phylogenomics allows us to uncover the | historical signal of evolutionary processes through time | and estimate phylogenetic networks accounting for

摘要： autoinducer signals* channelled through the GacS/GacA two* | complete genomes that cover 28 phylogenomic* clades across* | ABSTRACT Bacteria of the genus Pseudomonas are | ubiquitous on Earth due to their great metabolic | versatility and adaptation to fluctuating environments and

摘要： phylogenomic data. The most-to-second ratio is a valid | measure of phylogenetic support for phylogenomic* data to* | express the level of the phylogenetic signals. | Whole-genome data provide all genetic | information and offer a promising opportunity to reconstruct

摘要： phylogeny. The phylogenomic* analyses support recognizing* | indicating conflicting signals* across the phylogeny* | ; therefore, they are imperative for plant phylogenomic | © 2023 Elsevier Inc.A set of newly designed | Vitaceae baits targeting 1013 genes was employed to

摘要： decade, genomic and phylogenomic* datasets have revealed* | lineages of flowering plants. However, phylogenomic | disentangling signals* of ancient hybridization from other* | Hybridization has long been recognized as a | fundamental evolutionary process in plants but, until

摘要： identified signals* of hybridization and introgression* | within our phylogenomic* dataset using several* | Background and Aims Hybridization has long | been recognized as an important process for plant | evolution and is often accompanied by polyploidization

摘要： phylogenetic comparative framework. Phylogenomic* analyses* | analyses to assess signals* underlying contentious* | Background Plastid genomes (plastomes) have | long been recognized as highly conserved in their | overall structure, size, gene arrangement and content