NSTL国家科技图书文献中心

1. Computational insights into host-pathogen protein interactions: unveiling penaeid shrimp and white spot syndrome virus interplay NSTL国家科技图书文献中心

Kaikkolante, Nimisha | Katneni, Vinaya Kuma...... - 《Molecular genetics and genomics》 - 2025,300(1) - 共18页

摘要： interaction with the WSSV. This study employed orthology | White spot syndrome virus (WSSV) has been a | major threat in shrimp farming system especially for | penaeid shrimps. The lack of effective control measures | for WSSV makes this disease a significant threat to

关键词： Domain | Host pathogen interaction | Orthology | Penaeus | Protein-protein interaction | White spot syndrome virus

2. Temporal Gene Expression Profiles From Pollination to Seed Maturity in Sorghum Provide Core Candidates for Engineering Seed Traits NSTL国家科技图书文献中心

Rubi Jain | Namrata Dhaka ... - 《Plant, Cell & Environment》 - 2025,48(4) - 2662～2690 - 共29页

摘要：, transcription factor enrichment and orthology, delineated the | ABSTRACT Sorghum (Sorghum bicolor (L.) Moench | ) is a highly nutritional multipurpose millet crop | . However, the genetic and molecular regulatory mechanisms | governing sorghum grain development and the associated

关键词： grain filling | seed development | seed size | seed storage proteins | sorghum | starch content | transcriptome

3. In Silico Discovery of Antigenic-Secreted Proteins to Diagnostic Human Toxocariasis NSTL国家科技图书文献中心

María A.,Henao | Isabella,Cortes ... - 《Acta parasitologica》 - 2025,70(1) - 共7页

摘要： their orthology* inference, only three proteins met all* | Abstract Background Human toxocariasis is a | helminthic zoonosis caused by infection of Toxocara canis | or T. cati. Humans can be infected by through | ingestion of embryonated eggs from contaminated water

关键词： Antigens | Biomarkers | Immunodiagnosis | Parasitology | Toxocara canis | Toxocariasis

4. Biosynthesis of long-chain polyunsaturated fatty acids in the nereid polychaete Hediste diversicolor: : Molecular cloning and functional characterisation of three fatty acyl elongases and two front-end desaturases NSTL国家科技图书文献中心

Villena-Rodriguez, A... | Navarro, Juan C.... - 《Aquaculture》 - 2025,595(Pt.1) - 共12页

摘要： analysis established the orthology* of three Elovl* | Aquaculture of carnivorous fish species | heavily relies on marine ingredients to guarantee the | provision of essential nutrients, including long-chain (C | 20-24 ) polyunsaturated fatty acids (LC-PUFA) such

关键词： Elovl enzymes | Fed enzymes | Functional characterisation | Hediste diversicolor | LC-PUFA biosynthesis

5. Orthology and Paralogy Relationships at Transcript Level NSTL国家科技图书文献中心

Ouedraogo, Wend Yam ... | Ouangraoua, Aida - 《Journal of computational biology: A journal of computational molecular cell biology》 - 2024,31(4) - 277～293 - 共17页 - 被引量：1

摘要： this work, we present the definition of orthology* and* | Eukaryotic genes undergo a mechanism called | alternative processing, resulting in transcriptome diversity | by allowing the production of multiple distinct | transcripts from a gene. More than half of human genes are

关键词： isoorthology | orthology and paralogy | transcript phylogeny | transcriptome

6. Application of orthology and network biology to infer gene functions in non-model plants NSTL国家科技图书文献中心

Vandepoele, Klaas | Thierens, Sander ... - 《Physiologia plantarum》 - 2024,176(4) - ARTN e14441～ - 共10页 - 被引量：2

摘要： annotation of gene products, based on orthology* or network* | Approximately 60% of the genes and gene | products in the model species Arabidopsis thaliana have | been functionally characterized. In non-model plant | species, the functional annotation of the gene space is

关键词： RESOURCE | COMPLETENESS | EVOLUTION | DATABASE | REVEALS

7. REvolutionH-tl: Reconstruction of Evolutionary Histories tool NSTL国家科技图书文献中心

Jose Antonio Ramirez... | Annachiara Korchmaro...... - 《Comparative Genomics: 21st International Conference, RECOMB-CG 2024, Boston, MA, USA, April 27-28, 2024, Proceedings》 - International Conference on Research in Computational Molecular Biology-Comparative Genomics - 2024, - 89～109 - 共21页

摘要：Orthology detection from sequence similarity | , orthology, and paralogy relationships first, and it uses | remains a difficult and computationally expensive | problem for gene families with large numbers of gene | duplications and losses. REvolutionH-tl implements a new

关键词： Best matches | Orthology | Evolutionary scenarios

8. Advancing Pyrus phylogeny: Deep genome skimming‐based inference coupled with paralogy analysis yields a robust phylogenetic backbone and an updated infrageneric classification of the pear genus (Maleae, Rosaceae) NSTL国家科技图书文献中心

Ze‐Tao Jin | Dai‐Kun Ma ... - 《Taxon》 - 2024,73(3) - 784～799 - 共16页

摘要：‐based method for nuclear orthology* inference, which* | Abstract The lack of a robust phylogenetic | backbone has posed significant challenges to proposing an | infrageneric taxonomic classification of the pear genus | , Pyrus, a widely distributed Eurasian lineage of

关键词： chloroplast genome | Maleae | orthology inference | paralogy | Pyrus | taxonomy

9. Inferring Transcript Phylogenies from Transcript Ortholog Clusters NSTL国家科技图书文献中心

Wend Yam D. D. Ouedr... | Aida Ouangraoua - 《Comparative Genomics: 21st International Conference, RECOMB-CG 2024, Boston, MA, USA, April 27-28, 2024, Proceedings》 - International Conference on Research in Computational Molecular Biology-Comparative Genomics - 2024, - 47～68 - 共22页

摘要： addressed the problem of inferring orthology* and paralogy* | Alternative Splicing (AS) is a mechanism in | eukaryotic gene expression by which different combinations | of introns are spliced to produce distinct | transcript isoforms from a gene. Recent studies have

关键词： Transcriptome | Orthology and paralogy | Tree reconciliation | Transcript evolution

10. Annotation-Based Study on Hypothetical Proteins in Bacteria Using Classification Features NSTL国家科技图书文献中心

Prasad, Anchita | Suravajhala, Prashan...... - 《Current proteomics》 - 2024,21(3) - 174～186 - 共13页

摘要：, orthology, String, Bi-directional Best Blast Hit, PSLpred | Background Hypothetical proteins (HPs) are | those proteins whose functions are unknown; therefore | , the present study was carried out to predict | similarity-based functionality of HPs in selected bacteria

摘要： interaction with the WSSV. This study employed orthology | White spot syndrome virus (WSSV) has been a | major threat in shrimp farming system especially for | penaeid shrimps. The lack of effective control measures | for WSSV makes this disease a significant threat to

关键词： Domain | Host pathogen interaction | Orthology | Penaeus | Protein-protein interaction | White spot syndrome virus

摘要：, transcription factor enrichment and orthology, delineated the | ABSTRACT Sorghum (Sorghum bicolor (L.) Moench | ) is a highly nutritional multipurpose millet crop | . However, the genetic and molecular regulatory mechanisms | governing sorghum grain development and the associated

关键词： grain filling | seed development | seed size | seed storage proteins | sorghum | starch content | transcriptome

摘要： their orthology* inference, only three proteins met all* | Abstract Background Human toxocariasis is a | helminthic zoonosis caused by infection of Toxocara canis | or T. cati. Humans can be infected by through | ingestion of embryonated eggs from contaminated water

关键词： Antigens | Biomarkers | Immunodiagnosis | Parasitology | Toxocara canis | Toxocariasis

摘要： analysis established the orthology* of three Elovl* | Aquaculture of carnivorous fish species | heavily relies on marine ingredients to guarantee the | provision of essential nutrients, including long-chain (C | 20-24 ) polyunsaturated fatty acids (LC-PUFA) such

关键词： Elovl enzymes | Fed enzymes | Functional characterisation | Hediste diversicolor | LC-PUFA biosynthesis

摘要： this work, we present the definition of orthology* and* | Eukaryotic genes undergo a mechanism called | alternative processing, resulting in transcriptome diversity | by allowing the production of multiple distinct | transcripts from a gene. More than half of human genes are

关键词： isoorthology | orthology and paralogy | transcript phylogeny | transcriptome

摘要： annotation of gene products, based on orthology* or network* | Approximately 60% of the genes and gene | products in the model species Arabidopsis thaliana have | been functionally characterized. In non-model plant | species, the functional annotation of the gene space is

关键词： RESOURCE | COMPLETENESS | EVOLUTION | DATABASE | REVEALS

摘要：Orthology detection from sequence similarity | , orthology, and paralogy relationships first, and it uses | remains a difficult and computationally expensive | problem for gene families with large numbers of gene | duplications and losses. REvolutionH-tl implements a new

关键词： Best matches | Orthology | Evolutionary scenarios

摘要：‐based method for nuclear orthology* inference, which* | Abstract The lack of a robust phylogenetic | backbone has posed significant challenges to proposing an | infrageneric taxonomic classification of the pear genus | , Pyrus, a widely distributed Eurasian lineage of

关键词： chloroplast genome | Maleae | orthology inference | paralogy | Pyrus | taxonomy

摘要： addressed the problem of inferring orthology* and paralogy* | Alternative Splicing (AS) is a mechanism in | eukaryotic gene expression by which different combinations | of introns are spliced to produce distinct | transcript isoforms from a gene. Recent studies have

关键词： Transcriptome | Orthology and paralogy | Tree reconciliation | Transcript evolution

摘要：, orthology, String, Bi-directional Best Blast Hit, PSLpred | Background Hypothetical proteins (HPs) are | those proteins whose functions are unknown; therefore | , the present study was carried out to predict | similarity-based functionality of HPs in selected bacteria

关键词： Annotation | bidirectional best blast hit | hypothetical proteins | homology modeling | orthology | Pfam | pseudogenes

4008-161-200 800-990-8900

国家科技图书文献中心

摘要： interaction with the WSSV. This study employed orthology | White spot syndrome virus (WSSV) has been a | major threat in shrimp farming system especially for | penaeid shrimps. The lack of effective control measures | for WSSV makes this disease a significant threat to

关键词： Domain | Host pathogen interaction | Orthology | Penaeus | Protein-protein interaction | White spot syndrome virus

摘要：, transcription factor enrichment and orthology, delineated the | ABSTRACT Sorghum (Sorghum bicolor (L.) Moench | ) is a highly nutritional multipurpose millet crop | . However, the genetic and molecular regulatory mechanisms | governing sorghum grain development and the associated

关键词： grain filling | seed development | seed size | seed storage proteins | sorghum | starch content | transcriptome

摘要： their orthology inference, only three proteins met all | Abstract Background Human toxocariasis is a | helminthic zoonosis caused by infection of Toxocara canis | or T. cati. Humans can be infected by through | ingestion of embryonated eggs from contaminated water

关键词： Antigens | Biomarkers | Immunodiagnosis | Parasitology | Toxocara canis | Toxocariasis

摘要： analysis established the orthology of three Elovl | Aquaculture of carnivorous fish species | heavily relies on marine ingredients to guarantee the | provision of essential nutrients, including long-chain (C | 20-24 ) polyunsaturated fatty acids (LC-PUFA) such

关键词： Elovl enzymes | Fed enzymes | Functional characterisation | Hediste diversicolor | LC-PUFA biosynthesis

摘要： this work, we present the definition of orthology and | Eukaryotic genes undergo a mechanism called | alternative processing, resulting in transcriptome diversity | by allowing the production of multiple distinct | transcripts from a gene. More than half of human genes are

关键词： isoorthology | orthology and paralogy | transcript phylogeny | transcriptome

摘要： annotation of gene products, based on orthology or network | Approximately 60% of the genes and gene | products in the model species Arabidopsis thaliana have | been functionally characterized. In non-model plant | species, the functional annotation of the gene space is

关键词： RESOURCE | COMPLETENESS | EVOLUTION | DATABASE | REVEALS

摘要：Orthology detection from sequence similarity | , orthology, and paralogy relationships first, and it uses | remains a difficult and computationally expensive | problem for gene families with large numbers of gene | duplications and losses. REvolutionH-tl implements a new

关键词： Best matches | Orthology | Evolutionary scenarios

摘要：‐based method for nuclear orthology inference, which | Abstract The lack of a robust phylogenetic | backbone has posed significant challenges to proposing an | infrageneric taxonomic classification of the pear genus | , Pyrus, a widely distributed Eurasian lineage of

关键词： chloroplast genome | Maleae | orthology inference | paralogy | Pyrus | taxonomy

摘要： addressed the problem of inferring orthology and paralogy | Alternative Splicing (AS) is a mechanism in | eukaryotic gene expression by which different combinations | of introns are spliced to produce distinct | transcript isoforms from a gene. Recent studies have

关键词： Transcriptome | Orthology and paralogy | Tree reconciliation | Transcript evolution

摘要：, orthology, String, Bi-directional Best Blast Hit, PSLpred | Background Hypothetical proteins (HPs) are | those proteins whose functions are unknown; therefore | , the present study was carried out to predict | similarity-based functionality of HPs in selected bacteria

关键词： Annotation | bidirectional best blast hit | hypothetical proteins | homology modeling | orthology | Pfam | pseudogenes

4008-161-200 800-990-8900

国家科技图书文献中心

摘要： their orthology* inference, only three proteins met all* | Abstract Background Human toxocariasis is a | helminthic zoonosis caused by infection of Toxocara canis | or T. cati. Humans can be infected by through | ingestion of embryonated eggs from contaminated water

摘要： analysis established the orthology* of three Elovl* | Aquaculture of carnivorous fish species | heavily relies on marine ingredients to guarantee the | provision of essential nutrients, including long-chain (C | 20-24 ) polyunsaturated fatty acids (LC-PUFA) such

摘要： this work, we present the definition of orthology* and* | Eukaryotic genes undergo a mechanism called | alternative processing, resulting in transcriptome diversity | by allowing the production of multiple distinct | transcripts from a gene. More than half of human genes are

摘要： annotation of gene products, based on orthology* or network* | Approximately 60% of the genes and gene | products in the model species Arabidopsis thaliana have | been functionally characterized. In non-model plant | species, the functional annotation of the gene space is

摘要：‐based method for nuclear orthology* inference, which* | Abstract The lack of a robust phylogenetic | backbone has posed significant challenges to proposing an | infrageneric taxonomic classification of the pear genus | , Pyrus, a widely distributed Eurasian lineage of

摘要： addressed the problem of inferring orthology* and paralogy* | Alternative Splicing (AS) is a mechanism in | eukaryotic gene expression by which different combinations | of introns are spliced to produce distinct | transcript isoforms from a gene. Recent studies have