NSTL国家科技图书文献中心

1. A Strategy of Assessing Gene Copy Number Differentiation Between Populations Using Ultra-Fast De Novo Assembly of Next-Generation Sequencing Data NSTL国家科技图书文献中心

Shi, Tao | Gao, Zhiyan ... - 《Molecular ecology resources》 - 2025,25(4) - n/a～n/a - 共14页

摘要：, ST4gCNV, which leverages ultra-fast de novo* assemblies* | Gene duplication and loss play pivotal roles | in the evolutionary dynamics of genomes | , contributing to species phenotypic diversity and adaptation | . However, detecting copy number variations (CNVs) in

关键词： de novo assembly | gene copy number variation | Nelumbo | next-generation sequencing | next‐generation sequencing

2. De novo assembly and characterization of the complete mitochondrial genome of Phellodendron amurense reveals three repeat-mediated recombination NSTL国家科技图书文献中心

Liu, Junlin | Yu, Shaoshuai ... - 《Gene》 - 2025,935 - 149031～149031 - 共13页 - 被引量：1

摘要：-ever systematic assembly* and annotation of the* | Phellodendron amurense Rupr., a rare herb | renowned for its medicinal and ecological significance | , has remained genetically unexplored at the | mitochondrial level until now. This study presents the first

关键词： Phellodendron amurense Rupr. | Mitogenome | Repeat elements | RNA-editing site | Mitochondrial plastid sequences

3. De Novo Genome Assembly and Comparative Genome Analysis of the Novel Human Fungal Pathogen Trichosporon austroamericanum Type-Strain CBS 17435 NSTL国家科技图书文献中心

Francisco, Elaine C. | Desnos-Ollivier, Mar...... - 《Mycopathologia》 - 2025,190(2) - 共4页

摘要： present the nanopore long-read-based de novo* genome* | assembly of the type-strain CBS 17435. Additionally, we | Trichosporon austroamericanum is a recently | described species recognized for its emerging clinical | significance in invasive trichosporonosis. In this study, we

关键词： Rare yeasts | Emerging pathogen | Nanopore sequencing | Genome assembly | Trichosporon austroamericanum | Trichosporon inkin

4. Pandanus amaryllifolius transcriptome under drought stress reveals differential expression profile of genes related to plant hormone signal transduction and MAPK signaling pathways NSTL国家科技图书文献中心

Norhafizah, Sidek | Tan, Boon Chin ... - 《Brazilian Journal of Botany》 - 2025,48(1) - 共16页

摘要： novo transcriptome assembly produced 257,695 | treatment for 7 and 14 days after water withdrawal. De | Pandanus amaryllifolius Roxb. is an | ecologically and economically important plant, yet its | response to environmental stresses, such as drought

关键词： De novo assembly | nCounter (R) NanoString Technology | RNA-seq | Stress response

5. Perturbation of de novo lipogenesis hinders MERS-CoV assembly and release, but not the biogenesis of viral replication organelles NSTL国家科技图书文献中心

Soultsioti, M. | de Jong, A. W. M.... - 《Journal of Virology》 - 2025,99(3) - e02282-24～e02282-24 - 共23页

摘要： factors in de novo* fatty acid biosynthesis, led to* | membranes for assembly* and budding of their enveloped* | stages, indicating that MERS-CoV assembly* is adversely* | particle assembly. IMPORTANCE Middle East respiratory | , significantly disrupts MERS-CoV particle assembly* without*

关键词： coronavirus | TOFA | 2-BP | acetyl-CoA carboxylase | lipid metabolism | palmitoylation

6. De novo genome assembly and annotations of Bombus lapidarius and Bombus niveatus provide insights into the environmental adaptability NSTL国家科技图书文献中心

Eldem, Vahap | Cinar, Yusuf Ulas ... - 《Apidologie》 - 2025,56(1) - 共25页

摘要：, we report a de novo* genome assembly and annotation* | Bumblebees are ubiquitous, cold-adapted | , primitively eusocial bees and important pollinators for | crops and vegetation. However, many species are | declining worldwide due to multiple factors, including

关键词： Bumblebees | Genome assembly | Adaptation | Positive selection signature | Gene family analysis

7. Use of Field pathogenomics approach for Puccinia striiformis f. sp. tritici race identification and phylogenomic delineation in North India NSTL国家科技图书文献中心

Ramesh, Gutha Venkat... | Kaur, Jaspal ... - 《World Journal of Microbiology & Biotechnology》 - 2025,41(5) - 共23页

摘要： 31.77 million raw reads. The clustered assembly | generated mean assembly* size of similar to 45.10 Mb* | Stripe rust of wheat caused by Puccinia | striiformis f. sp. tritici (Pst) is among the top 10 most | important fungal phytopathogens in the world, threatening

关键词： Puccinia striiformis f. sp. tritici ( Pst ) | RNA-sequencing | de novo transcriptome assembly | KASP markers | Wheat | Stripe rust

8. First transcriptome assembly of a new ciliate species ( Protocruzia marianaensis) isolated from the Mariana Trench area NSTL国家科技图书文献中心

Liang, Chen | Wang, Wei ... - 《Marine genomics》 - 2025,79 - 共6页

摘要： novo assembly and analysis of the coding regions | assembly of a newly discovered a new Protocruzia species | . marianaensis using the Illumina Novaseq 6000 platform. De | This is the first report of a transcriptome | sampled from the under-sampled area near the Mariana

关键词： Protocruzia marianaensis | Transcriptome | De novo | Mariana Trench area

9. A genome assembly for the California endemic liverwort Calasterella californica NSTL国家科技图书文献中心

Gonzalez-Ramirez, Ix... | Escalona, Merly ... - 《The Journal of Heredity》 - 2025,116(3) - 389～396 - 共8页

摘要：-read sequencing data to produce a de novo assembly | report on the assembly* of the nuclear genome of C* | Calasterella californica belongs to a | monotypic genus of liverworts endemic to the west coast of | North America, primarily distributed in California

关键词： Asterella californica | Aytoniaceae | California Conservation Genomics Project | CCGP | liverworts

10. Engineering the Microstructure and Spatial Bioactivity of MAP Scaffolds Instructs Vasculogenesis In Vitro and Modifies Vessel Formation In Vivo NSTL国家科技图书文献中心

Alexa R. Anderson | Eleanor L. P. Caston ... - 《Advanced functional materials》 - 2025,35(3) - 2400567.1～2400567.18 - 共18页

摘要： novo assembly of endothelial progenitor-like cells | independently tuned to guide cell growth in 3D and promote de | In tissues where the vasculature is either | lacking or abnormal, biomaterials can be designed to | promote vessel formation and enhance tissue repair. In

摘要：, ST4gCNV, which leverages ultra-fast de novo* assemblies* | Gene duplication and loss play pivotal roles | in the evolutionary dynamics of genomes | , contributing to species phenotypic diversity and adaptation | . However, detecting copy number variations (CNVs) in

关键词： de novo assembly | gene copy number variation | Nelumbo | next-generation sequencing | next‐generation sequencing

摘要：-ever systematic assembly* and annotation of the* | Phellodendron amurense Rupr., a rare herb | renowned for its medicinal and ecological significance | , has remained genetically unexplored at the | mitochondrial level until now. This study presents the first

关键词： Phellodendron amurense Rupr. | Mitogenome | Repeat elements | RNA-editing site | Mitochondrial plastid sequences

摘要： present the nanopore long-read-based de novo* genome* | assembly of the type-strain CBS 17435. Additionally, we | Trichosporon austroamericanum is a recently | described species recognized for its emerging clinical | significance in invasive trichosporonosis. In this study, we

关键词： Rare yeasts | Emerging pathogen | Nanopore sequencing | Genome assembly | Trichosporon austroamericanum | Trichosporon inkin

摘要： novo transcriptome assembly produced 257,695 | treatment for 7 and 14 days after water withdrawal. De | Pandanus amaryllifolius Roxb. is an | ecologically and economically important plant, yet its | response to environmental stresses, such as drought

关键词： De novo assembly | nCounter (R) NanoString Technology | RNA-seq | Stress response

摘要： factors in de novo* fatty acid biosynthesis, led to* | membranes for assembly* and budding of their enveloped* | stages, indicating that MERS-CoV assembly* is adversely* | particle assembly. IMPORTANCE Middle East respiratory | , significantly disrupts MERS-CoV particle assembly* without*

关键词： coronavirus | TOFA | 2-BP | acetyl-CoA carboxylase | lipid metabolism | palmitoylation

摘要：, we report a de novo* genome assembly and annotation* | Bumblebees are ubiquitous, cold-adapted | , primitively eusocial bees and important pollinators for | crops and vegetation. However, many species are | declining worldwide due to multiple factors, including

关键词： Bumblebees | Genome assembly | Adaptation | Positive selection signature | Gene family analysis

摘要： 31.77 million raw reads. The clustered assembly | generated mean assembly* size of similar to 45.10 Mb* | Stripe rust of wheat caused by Puccinia | striiformis f. sp. tritici (Pst) is among the top 10 most | important fungal phytopathogens in the world, threatening

关键词： Puccinia striiformis f. sp. tritici ( Pst ) | RNA-sequencing | de novo transcriptome assembly | KASP markers | Wheat | Stripe rust

摘要： novo assembly and analysis of the coding regions | assembly of a newly discovered a new Protocruzia species | . marianaensis using the Illumina Novaseq 6000 platform. De | This is the first report of a transcriptome | sampled from the under-sampled area near the Mariana

关键词： Protocruzia marianaensis | Transcriptome | De novo | Mariana Trench area

摘要：-read sequencing data to produce a de novo assembly | report on the assembly* of the nuclear genome of C* | Calasterella californica belongs to a | monotypic genus of liverworts endemic to the west coast of | North America, primarily distributed in California

关键词： Asterella californica | Aytoniaceae | California Conservation Genomics Project | CCGP | liverworts

摘要： novo assembly of endothelial progenitor-like cells | independently tuned to guide cell growth in 3D and promote de | In tissues where the vasculature is either | lacking or abnormal, biomaterials can be designed to | promote vessel formation and enhance tissue repair. In

关键词： granular | hydrogels | microgels | microstructures | neovascularization | vasculogenesis

4008-161-200 800-990-8900

国家科技图书文献中心

摘要：, ST4gCNV, which leverages ultra-fast de novo assemblies | Gene duplication and loss play pivotal roles | in the evolutionary dynamics of genomes | , contributing to species phenotypic diversity and adaptation | . However, detecting copy number variations (CNVs) in

关键词： de novo assembly | gene copy number variation | Nelumbo | next-generation sequencing | next‐generation sequencing

摘要：-ever systematic assembly and annotation of the | Phellodendron amurense Rupr., a rare herb | renowned for its medicinal and ecological significance | , has remained genetically unexplored at the | mitochondrial level until now. This study presents the first

关键词： Phellodendron amurense Rupr. | Mitogenome | Repeat elements | RNA-editing site | Mitochondrial plastid sequences

摘要： present the nanopore long-read-based de novo genome | assembly of the type-strain CBS 17435. Additionally, we | Trichosporon austroamericanum is a recently | described species recognized for its emerging clinical | significance in invasive trichosporonosis. In this study, we

关键词： Rare yeasts | Emerging pathogen | Nanopore sequencing | Genome assembly | Trichosporon austroamericanum | Trichosporon inkin

摘要： novo transcriptome assembly produced 257,695 | treatment for 7 and 14 days after water withdrawal. De | Pandanus amaryllifolius Roxb. is an | ecologically and economically important plant, yet its | response to environmental stresses, such as drought

关键词： De novo assembly | nCounter (R) NanoString Technology | RNA-seq | Stress response

摘要： factors in de novo fatty acid biosynthesis, led to | membranes for assembly and budding of their enveloped | stages, indicating that MERS-CoV assembly is adversely | particle assembly. IMPORTANCE Middle East respiratory | , significantly disrupts MERS-CoV particle assembly without

关键词： coronavirus | TOFA | 2-BP | acetyl-CoA carboxylase | lipid metabolism | palmitoylation

摘要：, we report a de novo genome assembly and annotation | Bumblebees are ubiquitous, cold-adapted | , primitively eusocial bees and important pollinators for | crops and vegetation. However, many species are | declining worldwide due to multiple factors, including

关键词： Bumblebees | Genome assembly | Adaptation | Positive selection signature | Gene family analysis

摘要： 31.77 million raw reads. The clustered assembly | generated mean assembly size of similar to 45.10 Mb | Stripe rust of wheat caused by Puccinia | striiformis f. sp. tritici (Pst) is among the top 10 most | important fungal phytopathogens in the world, threatening

关键词： Puccinia striiformis f. sp. tritici ( Pst ) | RNA-sequencing | de novo transcriptome assembly | KASP markers | Wheat | Stripe rust

摘要： novo assembly and analysis of the coding regions | assembly of a newly discovered a new Protocruzia species | . marianaensis using the Illumina Novaseq 6000 platform. De | This is the first report of a transcriptome | sampled from the under-sampled area near the Mariana

关键词： Protocruzia marianaensis | Transcriptome | De novo | Mariana Trench area

摘要：-read sequencing data to produce a de novo assembly | report on the assembly of the nuclear genome of C | Calasterella californica belongs to a | monotypic genus of liverworts endemic to the west coast of | North America, primarily distributed in California

关键词： Asterella californica | Aytoniaceae | California Conservation Genomics Project | CCGP | liverworts

摘要： novo assembly of endothelial progenitor-like cells | independently tuned to guide cell growth in 3D and promote de | In tissues where the vasculature is either | lacking or abnormal, biomaterials can be designed to | promote vessel formation and enhance tissue repair. In

关键词： granular | hydrogels | microgels | microstructures | neovascularization | vasculogenesis

4008-161-200 800-990-8900

国家科技图书文献中心

摘要：, ST4gCNV, which leverages ultra-fast de novo* assemblies* | Gene duplication and loss play pivotal roles | in the evolutionary dynamics of genomes | , contributing to species phenotypic diversity and adaptation | . However, detecting copy number variations (CNVs) in

摘要：-ever systematic assembly* and annotation of the* | Phellodendron amurense Rupr., a rare herb | renowned for its medicinal and ecological significance | , has remained genetically unexplored at the | mitochondrial level until now. This study presents the first

摘要： present the nanopore long-read-based de novo* genome* | assembly of the type-strain CBS 17435. Additionally, we | Trichosporon austroamericanum is a recently | described species recognized for its emerging clinical | significance in invasive trichosporonosis. In this study, we

摘要： factors in de novo* fatty acid biosynthesis, led to* | membranes for assembly* and budding of their enveloped* | stages, indicating that MERS-CoV assembly* is adversely* | particle assembly. IMPORTANCE Middle East respiratory | , significantly disrupts MERS-CoV particle assembly* without*

摘要：, we report a de novo* genome assembly and annotation* | Bumblebees are ubiquitous, cold-adapted | , primitively eusocial bees and important pollinators for | crops and vegetation. However, many species are | declining worldwide due to multiple factors, including

摘要： 31.77 million raw reads. The clustered assembly | generated mean assembly* size of similar to 45.10 Mb* | Stripe rust of wheat caused by Puccinia | striiformis f. sp. tritici (Pst) is among the top 10 most | important fungal phytopathogens in the world, threatening

摘要：-read sequencing data to produce a de novo assembly | report on the assembly* of the nuclear genome of C* | Calasterella californica belongs to a | monotypic genus of liverworts endemic to the west coast of | North America, primarily distributed in California